Penapisan Senyawa Polifenol sebagai Inhibitor Betalaktamase dengan Penambatan Molekuler

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POPI ASRI KURNIATIN
AKIMDO RULI SIMANJUNTAK
UKHRADIYA MAGHARANIQ SAFIRA PURWANTO

Abstract

Betalaktamase adalah enzim yang mengkatalisis hidrolisis antibiotik Betalaktam sehingga dapat menyebabkan resistensi antibiotik. Bakteri yang dilaporkan dapat menghasilkan enzim Betalaktamase antara lain Klebsiella pneumoniae, Escherichia coli, Enterobacter sp., Salmonella sp., Proteus sp., Serratia marcescens, Shigella dysenteriae, Pseudomonas aeruginosa, dan Burkholderia cepacia. Saat ini resistensi terhadap antibiotik golongan Betalaktam semakin meluas. Penggunaan antibiotik ini seringkali dikombinasikan dengan inhibitor Betalaktamase seperti asam klavulanat, sulbaktam, dan tazobaktam untuk meningkatkan efisiensi terapi. Antibiotik betalaktam adalah antibiotik spektrum luas yang banyak menjadi pilihan untuk terapi. Oleh karena itu, pencarian kandidat inhibitor Betalaktamase untuk mencegah resistensi perlu dilakukan. Pada penelitian ini dilakukan penapisan senyawa polifenol sebagai inhibitor enzim Betalaktamase dengan metode penambatan molekuler. enapisan terhadap 112 senyawa polifenol dari database menghasilkan 27 senyawa yang memiliki energi bebas ikatan yang lebih baik dari ligan alami. Prediksi drug-likeness berdasarkan aturan Lipinski terhadap 27 senyawa tersebut menghasilkan 6 senyawa yang berpotensi, yaitu trans-resveratrol 3-O-glucuronide, apigenin-7-O-glucoside, cis-resveratrol 4'-sulfate, sulfuretin, dan apigenin. Berdasarkan visualisasi interaksi ligan-reseptor, keenam senyawa tersebut berinteraksi dengan residu katalitik enzim betalaktamase. Energi bebas ikatan terbaik ditunjukkan oleh trans-resveratrol 3-O-glucuronide sebesar -8,1 kkal/mol dan prediksi Ki sebesar 1,137 MikroM. Berdasarkan studi penambatan molekuler dan prediksi drug-likeness, 6 senyawa polifenol yang berpotensi tersebut dapat dilanjutkan untuk penelitian lebih lanjut.

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Author Biographies

POPI ASRI KURNIATIN, IPB University

Departemen Biokimia, Fakultas MIPA

AKIMDO RULI SIMANJUNTAK, IPB University

Departemen Biokimia, Fakultas MIPA

UKHRADIYA MAGHARANIQ SAFIRA PURWANTO, IPB University

Departemen Biokimia, Fakultas MIPA

References

R. Y. Corvianindiya and S. Brotosoetarno,"Resistensi bakteri oral biofilm terhadap antibiotik golongan beta-laktam," IJD, vol.11, no. 2, pp. 1499-1504, 2004.

A. Widodo, M. H. Effendi and R. A. Khairullah, "Extended-spectrum beta-laktamase (ESBL) - producing Escherichia coli from livestock," Sys Rev Pharm, vol. 11, no. 7, pp. 382-392, 2008.

Y. Chong, Y. Ito and T. Kamimura, "Genetic evolution and clinical impact in extended-spectrum beta-laktamase producing Escherichia coli and Klebsiella pneumoniae," Infect Genet Evol, vol. 11, no. 7, pp. 1499-1504, 2011.

C. Ewers, A. Bethe, T. Semmler, S. Guenther and L. H. Wieler, "Extended- spectrum beta-lactamse producing and AmpC producing Escherichia coli from

livestock and companion animals, and their putative impact on public health: a global perspective," Clin Microbiol Infect, vol. 18, no. 7, pp. 646-655, 2012.

S. M. Mandal, R. O. Dias and O. L. Franco, "Phenolic compounds in antimicrobial therapy," J Med Food, pp. 1-8, 2017.

M. Farhan, Penambatan molekuler senyawa aktif okra (Abelmoschus esculentus L.) pada enzim alfa-glukosidase sebagai kandidat obat antidiabetes melitus, Bogor: Institut Pertanian Bogor, 2019.

A. Putri, Potensi inhibisi senyawa fenolik buah stroberi terhadap aktivitas enzim aldosa reduktase dengan simulasi penambatan molekuler, Bogor: Institut Pertanian Bogor, 2019.

J. A. Jeniosa, Penambatan molekuler senyawa kurkuminoid, xanthorizol, beta-elemenon, zedoaron terhadap aktivitas inhibisi enzim dipeptidil peptidase IV, Bogor: Institut Pertanian Bogor, 2018.

M. B. Rastini, N. Giantri, K. Adnayani and N. Laksminai, "Molecular docking aktivitas antioksidan dari kuersetin terhadap kanker payudara secara in silico," Jurnal Kimia, vol. 13, no. 2, pp. 180-184, 2019.

D. Ernanda, Penapisan virtual senyawa aktif tumbuhan manggis, meniran, dan klabet sebagai obat kanker ovarium, Bogor: Institut Pertanian Bogor, 2019.

Frengki, D. P. Putra, F. S. Wahyuni, D. Khambri, H. Vanda and V. Sofia, "Potential antiviral of cathechins and their derivativeston inhibit SARS Cov-2 receptors of Mpro protein and spike glycoprotein in Covid-19 through the in silico approach," Jurnal Kedokteran Hewan, vol. 14, no. 3, pp. 59- 65, 2020.

R. Pratama, L. Ambarsari and T. I. Sumaryada, "Molecular interaction analysis of COX-2 against curcuminoid and xanthorizol ligand as anti breast cancer using melecular docking," Current Biochemistry, vol. 2, no. 3, pp. 139-149, 2015.

I. Aier, P. K. Varadwaj and U. Raj, "Structural insight into conformational stability of both wild-type and mutant EZH2 receptor," Scientific Reports, vol. 6, no. 1, pp. 1-10, 2016.

F. Z. Muttaqin, M. F. Pratama and F. Kurniawan, "Molecular docking and molecular dynamic studies of stilbene derivatives compounds as srtuin-3 (sirt-3) histone deacetylase inhibitor on melanoma skin cancer and their toxicities prediction," Journal of Pharmacopolium, vol. 2, no. 2, pp. 112-121, 2019.

A. J. Banegas-Luna, J. Carrasco and H. P. Sanchez, "A review of ligand-based virtual screening web tools and screening algorithms in large molecular databases in the age of big data," Future Med Chem, vol.10, no. 22, pp. 2641-2658, 2018.

M. S. Zubair, S. Maulana and A. Mukaddas, "Penambatan molekuler dan simulasi dinamika molekuler senyawa dari genus Nigela terhadap penambatan aktivitas enzim protease HIV-1," Jurnal Farmasi Galenika, vol. 6, no. 1, pp. 132-140, 2020.

C. Lipinski, F. Lombardo, B. W. Dominy and P. J. Feeney, "Experimental and computational approaches to estimate solubility and permeability in drug 126 Seminar Nasional Kimia 2019 UIN Sunan Gunung Djati Bandung discovery and development setting,"Advanced Drug Delivery Review, vol. 23, no. 1, pp. 3-25, 1997.

T. Narko, B. Permana, R. Prasetiawati, D.Soni and F. Khairiyah, "Molecular docking study of bulb of bawang dayak (Eleutherine palmifolia (L) Merr) compound as anti servical cancer," Farmako Bahari, vol. 8, no. 2, pp. 1-14, 2017.

G. Syahputra, L. Ambarsari and T. Sumaryada, "Simulasi docking kurkuminenol, bisdetoksikurkumin dan analognya sebagai inhibitor enzim 12-lipoksigenase," Jurnal Biofisika, vol. 10, no. 1, pp. 55-67,2014.

R. A. Rachmania, Supandi and O. A. Larasati, "Analisis in silico senyawa diterpenoid lakton herba sambiloto (Andrographis paniculata Nees) pada reseptor alphaglukosidase sebagai antidiabetes tipe II," Pharmacy, vol. 12, no. 2, pp. 210-222, 2015.

R. Hanachi, S. Belaidi, A. Kerassa and S. Boughdiri, "Structure activity/property relationships of pyrazole derivates by MPO and QSAR methods for drug design," Res J Pharm Biol Chem Sci, vol. 6, no. 4, pp. 923-935, 2015.

A. Suhadi, Rizarullah and Feriyani, "Simulasi docking senyawa aktif daun binahong sebagai inhibitor enzim aldosa reduktase," Jurnal Penelitian Kesehatan, vol. 6, no. 2, pp. 45-65, 2019.

T. Palzkill, "Structural and mechanistic basis for extended-spectrum drug-resistance mutations in altering the specificity of TEM, STX-M and KPC betalaktamase," Front Mol Biosci, vol. 5, no. 16, pp. 1-19, 2018.

F. J. Kelutur, R. Mustarichie and A. K. Umar, "Virtual screening kandungan senyawa kipas laut (Gorgonia mariae) sebagai antiasma," Alchemy, vol. 16, no. 2, pp. 199-210, 2020.

D. Dermawan, R. Sumirtanurdin and D. Dewantisari, "Molecular dynamics simulation of estrogen receptor aplha against andrografolid as anti breast cancer," IJPST, vol. 6, no. 2, pp. 65-76, 2019.

L. J. Haupt, F. Kazmi, B. W. Ogilvie, D. B. Buckley, B. D. Smith, S. Leatherman, B. Paris, O. Parkinson and A. Parkinson , "The Reliability of estimating Ki values for direct, reversible inhibition of cytochrome p450 enzymes from corresponding IC50 values: a restropective analysis of 343 experiment," Drug Metab Dispos, vol. 43, no. 11, pp. 1-27, 2015.

R. Ruotolo, L. Calani, E. Fietta, F. Brighenti, A. Crozier, C. Meda, A. Maggi, S. Ottonello and D. Del Rio, "Anti-estrogenic activity of a human resveratrol metabolite," Nutr Metab Cardiovasc Dis, vol. 23, no. 11, pp. 1086- 92, 2013.

L. Svilar, J.-C. Martin, C. Defoort, C. Paut, F. Tourniaire and A. Brochot, "Quantification of trans-resveratrol and its metabolites in human plasma using ultra-high performance liquid chromatography tandem quadrupole-orbitrap mass spectrometry," J Chromatogr B Analyt Technol Biomed Life Sci, vol. 1, no. 1104, pp. 119-129, 2019.

M. Smiljkovic, D. Stanisavljevic, D. Stojkovic, I. Petrovic, J. M. Vicentic, J. Popovic, S. G. Grdadolnik, D. Markovic, S. Sankovic-Babice, J. Glamoclija, M. Stevanovic and M. Sokovic, "Apigenin-7-O- glucoside versus apigenin: Insight into the modes of anticandidal and cytotoxic actions," EXCLI J., vol. 23, no. 16, pp. 795-807, 2017.

H. Peng, X. Zhang and J. Xu, "Apigenin-7-O-betha-D-glycoside isolation from the highly copper-tolerant plant Elsholtzia splendens,"J Zhejiang Univ Sci B, vol. 17, no. 6, pp. 447-54, 2016.

M. Gulluce, F. Orhan, D. Yanmis, T. Arasoglu, Z. Guvenalp and L. O. Demirezer, "solation of a flavonoid, apigenin 7-O-glucoside, from Mentha longifolia (L.) Hudson subspecies longifolia and its genotoxic potency," Toxicol Ind Health, vol. 31, no. 9, pp. 831-40, 2015.

D. Lee, G. Jeong, B. Li, H. Park and Y. Kim, "Anti-inflammatory effects of sulfuretin from Rhus verniciflua Stokes via the 127 Seminar Nasional Kimia 2019 UIN Sunan Gunung Djati Bandung induction of heme oxygenase-1 expression in murine macrophages," Int Immunopharmacol, vol. 10, no. 8, pp. 850-8, 2010.

G. Syahputra, "Peran Bioinformatika dalam desain kandidat molekul obat," BioTrends, vol. 1, no. 1, pp. 26-27, 2015.

X. Chen, H. Li, L. Tian, Q. Li, J. Luo and Y. Zhang, "Analysis of the physicochemical properties of acaricides based on Lipinski's rule of five," Journal of Computational Biology, vol. 27, no. 9, pp. 1-10, 2020.